Status for February 11

11 Feb 2019

What have I worked on?

helmCent: wrote much of introduction. Got some code running, but it’s taking lots of time and I’m burning through my CPU hour allotment too fast if I keep this pace.
helmNets: the playNAR code runs, but there’s a memory leak somewhere that I can’t put my finger on. Currently running one simulation run and it’s sucking down 40-50gb. Makes no sense. Going to see if it’s just the modularity part that’s the cause, then consider cutting or refining it to get rid of leak.
checkerBoard2: reject and re-submit with really positive comments. I really wish they’d call it something different, because this honestly looks more like minor revisions to me.
reading: a few papers, including a community trajectory paper in Eco Monographs from De Caceres and folks that I’d been meaning to read for a bit.

logistics: some bs with my Finnish bank and my inability to use my card for the next 10 weeks.
checkerBoard2: sketch out plan for revisions
mothSync: push along conceptually, and make plot of spatial graph with nodes colored by mean cor and node size proportional to sd corr (or maybe species richness should be point size?).
helmBiogeog: get geographic coordinates and area.

helmNets: get overall net code running on jarno12 once R is updated there. This will get around time limitations and provide some nice sandboxing before I toss similar stuff on mareNostrum (Barcelona cluster).
helmCent: make sure code is producing some sort of output. By tomorrow it should’ve it one of the checkpoints in the code.
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